| Assiniboine East Sub-Basin |
| Assiniboine Souris Sub-Basin |
|
| Assiniboine South Sub-Basin |
|
| Assiniboine West Sub-Basin |
|
| Epinette Creek North Sub-Basin |
|
| Epinette Creek South Sub-Basin |
|
| Lower Whitemud East Sub-Basin |
|
| Pine Creek North Sub-Basin |
|
| Pine Creek South Sub-Basin |
|
| Squirrel Creek North Sub-Basin |
|
| Squirrel Creek South Sub-Basin |
|
| Upper Whitemud East Sub-Basin |
|
| Upper Whitemud West Sub-Basin |
| Others |
| N/A |
| Assiniboine West (AR08) |
| Berens River/Pigeon River (LW04) |
| Bird River/Whiteshell River (WR01) |
| Birdtail Creek/Oak River (AR07) |
| Bloodvein River (LW05) |
| Brokenhead River (LW10) |
| Cedar Lake (SR01) |
| Central Assiniboine (AR02) |
| Clearwater Lake/Moose Lakes (SR03) |
| Cooks Ck/Devils Ck (RR02) |
| Dauphin River/Dog Lake (LM01) |
| Duck Mountain East (LM09) |
| Fisher River/Washow Bay (LW07) |
| Icelandic River/Willow Ck (LW09) |
| La Salle River (RR04) |
| Lake Manitoba West (LM04) |
| Lake Winnipegosis (LM07) |
| Little Saskatchewan River (AR06) |
| Lower Assiniboine (AR01) |
| Manigotagan River/Wanipigow River (LW08) |
| Mantagao River/Saint Lakes (LW06) |
| Morris River (RR06) |
| Netley Ck/Grassmere Ck (RR01) |
| Oak Lake (AR05) |
| Pasquia River/Saskeram Lake (SR02) |
| Pembina River (RR09) |
| Poplar River (LW02) |
| Rat River (RR05) |
| Riviere Aux Marais/Plum River (RR07) |
| Roseau River (RR08) |
| Seine River (RR03) |
| Shell River (AR09) |
| Shoal Lakes/Delta Marsh (LM02) |
| Souris River West (AR04) |
| Souris River/Whitewater Lake (AR03) |
| Swan Lake (LM08) |
| Turtle River (LM05) |
| Twin Creeks/Warpath River (LW03) |
| Valley River (LM06) |
| Whitemouth River (WR02) |
| Whitemud River (LM03) |
